Publications

Peer Reviewed Publications

Christenson, Clay G.; Mohammad R. Gohardoust; Sebastian Calleja; Kelly R. Thorp; Markus Tuller; and Duke Pauli. (2024). “Monitoring Cotton Water Status with Microtensiometers.” Irrigation Science. https://doi.org/10.1007/s00271-024-00930-w

Eken, G. A.; Huang, Y. M.; Prucker, O.; Rühe, J.; & Ober, C. (2024). “Advancing Glucose Sensing Through Auto-Fluorescent Polymer Brushes: From Surface Design to Nano-Arrays.” Small.  https://doi.org/10.1002/smll.202309040

Lemke, M. D.; and Woodson, J. D. (2024). “A Genetic Screen for Dominant Chloroplast Reactive Oxygen Species Signaling Mutants Reveals Life Stage-specific Singlet Oxygen Signaling Networks.” Front. Plant Sci.  https://doi.org/10.3389/fpls.2023.1331346

Jain, Piyush; Annika E. Huber; Fulton E. Rockwell; Sabyasachi Sen; Noel Michele Holbrook; and Abraham D. Stroock. (2024). “Localized Measurements of Water Potential Reveal Large Loss of Conductance in Living Tissues of Maize Leaves.” Plant Physiology 194. doi.org/10.1093/plphys/kiad679

Jain, Piyush; Annika E. Huber; Fulton E. Rockwell; Sabyasachi Sen; N. Michele Holbrook; and Abraham D. Stroock. (2024). “New Approaches to Dissect Leaf Hydraulics Reveal Large Gradients in Living Tissues of Tomato Leaves.” New Phytologist. https://doi.org/10.1111/nph.19585

Matthew D. Lemke; Alexa N. Abate; and Jesse D. Woodson. (2024). “Investigating the mechanism of chloroplast singlet oxygen signaling in the Arabidopsis thaliana accelerated cell death 2 mutant.” Plant Signaling & Behavior. doi.org/10.1080/15592324.2024.2347783

Shiang-Wan Chin, Gloire Rubambiza, Yifan Zhao, Keyvan Malek, Hakim Weatherspoon. (2024). “Realtime optimization and management system (ROAM): A decision support system for digital agriculture systems.” Smart Agricultural Technology. doi.org/10.1016/j.atech.2024.100452

Jianing Han, Emma Parker Miller, Sijin Li. (2024). “Cutting-edge plant natural product pathway elucidation.” Current Opinion In Biotechnology. DOI: 10.1016/j.copbio.2024.103137

Peer Reviewed Publications

G. A. Eken, Y. M. Huang, Y. X. Guo, and C. Ober (2023). “Visualization of the pH Response through Autofluorescent Poly(styrene-alt-N-maleimide) Polyelectrolyte Brushes.” ACS Appl. Polym. Mater. https://doi.org/10.1021/acsapm.2c02066.

G. A. Eken, F. Kafer, C. Y. Yuan, I. Andrade, and C. K. Ober (2023) “Synthesis of N-Substituted Maleimides and Poly(styrene-co-N-maleimide) Copolymers and Their Potential Application as Photoresists.” Macromol. Chem. Phys. https://doi.org/10.1002/macp.202200256.

J. N. Han and S. J. Li (2023) “De novo biosynthesis of berberine and halogenated benzylisoquinoline alkaloids in Saccharomyces cerevisiae.” Comm. Chem., 10.1038/s42004-023-00821-9.

M. Heeney and M. H. Frank (2023) “The mRNA mobileome: Challenges and opportunities for deciphering signals from the noise.” The Plant Cell. https://doi.org/10.1093/plcell/koad063

R. Sanghvi, Kuo, J., Ravi, A. and Lal, A. (2023) “Towards Ultra-High Spatial Resolution Sensing of GHz Ultrasound Using Strain Modulation of Field Effect Transistors.” IEEE 36th International Conference on Micro Electro Mechanical Systems (MEMS) https://doi.org/10.1109/MEMS49605.2023.10052433.

T. Wilson, Amir, D., Shrivastav, V., Weatherspoon, H. and Kleinberg, R. (2023) “Extending Optimal Oblivious Reconfigurable Networks to all N.” Symposium on Algorithmic Principles of Computer Systems (APOCS) Society for Industrial and Applied Mathematics. https://doi.org/10.1137/1.9781611977578.ch1.

S. Wong, C. C. Tamarit, and J. F. Martínez (2023) “PUMICE: Processing-using-memory integration with a scalar pipeline for symbiotic execution.” Design Automation Conference (DAC), Association for Computing Machinery (ACM). DOI: 10.1109/DAC56929.2023.10247818

Y. Wu, Liu, C., Gong, F. and Li, S. (2023). “Discovering dynamic plant enzyme complexes in yeast for novel alkaloid pathway identification from a medicinal plant kratom.” Angewandte Chemie. doi.org/10.1002/anie.202307995

Y. Wu, F. L. Gong, and S. Li (2023) “Leveraging yeast to characterize plant biosynthetic gene clusters.” Current Opinion in Plant Biology. https://doi.org/10.1016/j.pbi.2022.102314

Books and Book Chapters

J. D. Woodson, M. D. Lemke, D. Tano, and S. Rai, “Chloroplast Signals and Their Effect on Nuclear Stress Gene Regulation, Cell Death, and Cellular Degradation Pathways,” in Nucleic Acids and Molecular Biology: Springer Submitted 2023.

Peer Reviewed Publications

D. Amir, T. Wilson, V. Shrivastav, H. Weatherspoon, R. Kleinberg, and R. Agarwal (2022). “Optimal Oblivious Reconfigurable Networks.” 54th Annual ACM SIGACT Symposium on Theory of Computing (STOC), Rome, ITALY. NEW YORK: Assoc Computing Machinery, in Annual ACM Symposium on Theory of Computing. https://doi.org/10.1145/3519935.3520020.

F. L. Gong, J. N. Han, and S. J. Li (2022). “MULTI-SCULPT: Multiplex Integration via Selective, CRISPR-Mediated, Ultralong Pathway Transformation in Yeast for Plant Natural Product Synthesis.” ACS Synth. Biol. https://doi.org/10.1021/acssynbio.2c00135.

M. D. Lemke and J. D. Woodson (2022). “Targeted for destruction: degradation of singlet oxygen-damaged chloroplasts.” Plant Signal. Behav. https://doi.org/10.1080/15592324.2022.2084955.

C. Liu and S. J. Li (2022). “Engineered biosynthesis of plant polyketides by type III polyketide synthases in microorganisms.” Front. Bioeng. Biotechnol., Review. https://doi.org/10.3389/fbioe.2022.1017190.

J. A. Noble, Bielski, N.V., Liu, M.C.J., DeFalco, T.A., Stegmann, M., Nelson, A.D., McNamara, K., Sullivan, B., Dinh, K.K., Khuu, N. and Hancock, S. (2022). “Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization.” Plant Physiol. https://doi.org/10.1093/plphys/kiac444.

G. Rubambiza, F. Romero Galvan, R. Pavlick, H. Weatherspoon, and K. M. Gold (2022). “Towards Cloud-Native, Machine Learning Based Detection of Crop Disease with Imaging Spectroscopy.” bioRxiv. https://doi.org/10.1101/2022.12.15.520316.

G. Rubambiza, P. Sengers, and H. Weatherspoon (2022). “Seamless Visions, Seamful Realities: Anticipating Rural Infrastructural Fragility in Early Design of Digital Agriculture.” ACM CHI Conference on Human Factors in Computing Systems Association for Computing Machinery. doi/10.1145/3491102.3517579

R. Sanghvi, J. Kuo, and A. Lal (2022). “Liquid Layer Evolution Characterization using GHz Ultrasonic Pulses: Linear and Nonlinear Effects.” Acoustofluidics, Chemical and Biological Microsystems Society. https://acoustofluidics.net/archive/materials/Acoustofluidics_2022_Materials.pdf

Y. A. Wu, M. N. Chen, and S. J. Li, (2022). “De novo biosynthesis of diverse plant-derived styrylpyrones in Saccharomyces cerevisiae.” Metab. Eng. Commun. https://doi.org/10.1016/j.mec.2022.e00195.

Non-Peer Reviewed Publications

The CROPPS Research Community (2022). “Digital Biology to Enable Sustainable and Resilient Agriculture.” The Bridge (NAE). https://www.nae.edu/276545/Digital-Biology-to-Enable-Sustainable-and-Resilient-Agriculture